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Cards of the 2006 Appalachian League Top Prospects set are NM or better
| NAME | QTY. | PRICE PER CARD |
| Checklist | 6 | 0.25 |
| Christian Andujar | 5 | 1.50 |
| Zach Britton | 5 | 1.50 |
| Alex Burnett | 7 | 1.50 |
| Nick Carr | 6 | 1.50 |
| Jonathan Edwards | 7 | 1.50 |
| Justin Edwards | 7 | 1.50 |
| Chase Fontaine | 6 | 2.00 |
| Emmanuel Garcia | 7 | 1.50 |
| Kent Gerst | 7 | 1.50 |
| Kyle Ginley | 4 | 1.50 |
| Jerad Head | 6 | 1.50 |
| Jansy Infante | 5 | 1.50 |
| Matt Inouye | 7 | 1.50 |
| Blake King | 7 | 1.50 |
| Brian Kirwan | 7 | 1.50 |
| Shawn O'Malley | 7 | 1.50 |
| Osiris Perez | 6 | 1.50 |
| Julio Polanco | 7 | 1.50 |
| Kieron Pope | 7 | 1.50 |
| Ronald Ramirez | 7 | 1.50 |
| Jamie Richmond | 6 | 1.50 |
| Orlando Rosles | 7 | 1.50 |
| Henry Sanchez | 7 | 1.75 |
| Victor Santana | 5 | 1.50 |
| Travis Snider | 1 | 4.00 |
| Polin Trinidad | 7 | 1.50 |